PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG424900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27039.7 Da    PI: 8.9329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG424900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.27.9e-32958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Pavir.1NG424900.2.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                         79**********************************************95 PP

2K-box83.35.2e-2879165793
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          ++ + ++++s++qe++kL+++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe +l++ R++K+++l e+ ++l++k ++  + n +
  Pavir.1NG424900.2.p  79 SNGALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKERHLGEMNRQLKHKLEAEGSSNYR 165
                          33455678********************************************************************98877666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.45E-46278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2285158IPR002487Transcription factor, K-box
PROSITE profilePS5129713.54186175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GITKTLERYQ HCCYNAQDSN GALSESQSWY QEMSKLRAKF EALQRTQRHL LGEDLGPLSV  120
KELQQLEKQL ECALSQARQR KERHLGEMNR QLKHKLEAEG SSNYRTLQHA AAWPAPGGTM  180
VEHDGAAYHV HPPAPSAAMD CEPTLQIGYP HHQFLPSEAA NNIPRSAPGG ENNFMLGWVL  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J2e-21269168Myocyte-specific enhancer factor 2A
3p57_I2e-21269168Myocyte-specific enhancer factor 2A
3p57_D2e-21269168Myocyte-specific enhancer factor 2A
3p57_C2e-21269168Myocyte-specific enhancer factor 2A
3p57_B2e-21269168Myocyte-specific enhancer factor 2A
3p57_A2e-21269168Myocyte-specific enhancer factor 2A
3kov_J2e-21269168Myocyte-specific enhancer factor 2A
3kov_I2e-21269168Myocyte-specific enhancer factor 2A
3kov_B2e-21269168Myocyte-specific enhancer factor 2A
3kov_A2e-21269168Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353731e-176BT035373.1 Zea mays full-length cDNA clone ZM_BFb0058A05 mRNA, complete cds.
GenBankKJ7275631e-176KJ727563.1 Zea mays clone pUT5423 MADS transcription factor (MADS12) mRNA, partial cds.
GenBankMZEMADSA1e-176L46397.1 Zea mays MADS-box protein (ZAG3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454472.11e-170hypothetical protein SORBIDRAFT_04g031750
SwissprotQ6EU391e-137MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBLC5Y0X91e-170C5Y0X9_SORBI; Putative uncharacterized protein Sb04g031750
STRINGSb04g031750.11e-170(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-89AGAMOUS-like 6